When performing a forced checkout, treat files as modified when the
workdir or the index is identical except for the mode.  This ensures
that force checkout will update the mode to the target.  (Apply this
check for regular files only, if one of the items was a file and the
other was another type of item then this would be a typechange and
handled independently.)

When we setup the revision walk for negotiating references with a
remote, we iterate over all references, ignoring tags and symbolic
references. While skipping over symbolic references, we forget to free
the looked up reference, resulting in a memory leak when the next
iteration simply overwrites the variable.

Fix that issue by freeing the reference at the beginning of each
iteration and collapsing return paths for error and success.

If a reference stored in a packed-refs file does not directly point to a
commit, tree or blob, the packed-refs file will also will include a
fully-peeled OID pointing to the first underlying object of that type.
If we try to peel a reference to an object, we will use that peeled OID
to speed up resolving the object.

As a reference for an annotated tag does not directly point to a commit,
tree or blob but instead to the tag object, the packed-refs file will
have an accomodating fully-peeled OID pointing to the object referenced
by that tag. When we use the fully-peeled OID pointing to the referenced
object when peeling, we obviously cannot peel that to the tag anymore.

Fix this issue by not using the fully-peeled OID whenever we want to
peel to a tag. Note that this does not include the case where we want to
resolve to _any_ object type. Existing code may make use from the fact
that we resolve those to commit objects instead of tag objects, even
though that behaviour is inconsistent between packed and loose
references. Furthermore, some tests of ours make the assumption that we
in fact resolve those references to a commit.

When we duplicate a user-provided options struct, we're stuck with freeing the
url in it. In case we add stuff to the proxy struct, let's add a function in
which to put the logic.

If fetch_spec was a non-pattern, and it is not the first iteration of push_status vector, then git_refspec_transform would result in the new value appended via git_buf_puts to the previous iteration value.

Forcibly clearing the buffer on each iteration to prevent this behavior.

If we enter the sha1_position() function with "lo == hi",
we have no elements. But the do-while loop means that we'll
enter the loop body once anyway, picking "mi" at that same
value and comparing nonsense to our desired key. This is
unlikely to match in practice, but we still shouldn't be
looking at the memory in the first place.

This bug is inherited from git.git; it was fixed there in
e01580cfe01526ec2c4eb4899f776a82ade7e0e1.

If the signature is invalid but we detect that after allocating the strings, we
free them. We however leave that pointer dangling in the structure the caller
gave us, which can lead to double-free.

Set these pointers to `NULL` after freeing their memory to avoid this.

When computing negative ignores, we throw away any rule which does not
undo a previous rule to optimize. But on case insensitive file systems,
we need to keep in mind that a negative ignore can also undo a previous
rule with different case, which we did not yet honor while determining
whether a rule undoes a previous one. So in the following example, we
fail to unignore the "/Case" directory:

    /case
    !/Case

Make both paths checking whether a plain- or wildcard-based rule undo a
previous rule aware of case-insensitivity. This fixes the described
issue.

This test is by Carlos Martín Nieto.

Ignore rules allow for reverting a previously ignored rule by prefixing
it with an exclamation mark. As such, a negative rule can only override
previously ignored files. While computing all ignore patterns, we try to
use this fact to optimize away some negative rules which do not override
any previous patterns, as they won't change the outcome anyway.

In some cases, though, this optimization causes us to get the actual
ignores wrong for some files. This may happen whenever the pattern
contains a wildcard, as we are unable to reason about whether a pattern
overrides a previous pattern in a sane way. This happens for example in
the case where a gitignore file contains "*.c" and "!src/*.c", where we
wouldn't un-ignore files inside of the "src/" subdirectory.

In this case, the first solution coming to mind may be to just strip the
"src/" prefix and simply compare the basenames. While that would work
here, it would stop working as soon as the basename pattern itself is
different, like for example with "*x.c" and "!src/*.c. As such, we
settle for the easier fix of just not optimizing away rules that contain
a wildcard.

`sin_port` should be in network byte order.

Fixes #4274

Security fixes for reading index v4

When computing the complete path length from the encoded
prefix-compressed path, we end up just allocating the complete path
without ever checking what the encoded path length actually is. This can
easily lead to a denial of service by just encoding an unreasonable long
path name inside of the index. Git already enforces a maximum path
length of 4096 bytes. As we also have that enforcement ready in some
places, just make sure that the resulting path is smaller than
GIT_PATH_MAX.

Reported-by: Krishna Ram Prakash R <krp@gtux.in>
Reported-by: Vivek Parikh <viv0411.parikh@gmail.com>

The index format in version 4 has prefix-compressed entries, where every
index entry can compress its path by using a path prefix of the previous
entry. Since implmenting support for this index format version in commit
5625d86b (index: support index v4, 2016-05-17), though, we do not
correctly verify that the prefix length that we want to reuse is
actually smaller or equal to the amount of characters than the length of
the previous index entry's path. This can lead to a an integer underflow
and subsequently to an out-of-bounds read.

Fix this by verifying that the prefix is actually smaller than the
previous entry's path length.

Reported-by: Krishna Ram Prakash R <krp@gtux.in>
Reported-by: Vivek Parikh <viv0411.parikh@gmail.com>

The function `read_entry` does not conform to our usual coding style of
returning stuff via the out parameter and to use the return value for
reporting errors. Due to most of our code conforming to that pattern, it
has become quite natural for us to actually return `-1` in case there is
any error, which has also slipped in with commit 5625d86b (index:
support index v4, 2016-05-17). As the function returns an `size_t` only,
though, the return value is wrapped around, causing the caller of
`read_tree` to continue with an invalid index entry. Ultimately, this
can lead to a double-free.

Improve code and fix the bug by converting the function to return the
index entry size via an out parameter and only using the return value to
indicate errors.

Reported-by: Krishna Ram Prakash R <krp@gtux.in>
Reported-by: Vivek Parikh <viv0411.parikh@gmail.com>

deps: upgrade embedded zlib to version 1.2.11

The VM on Travis apparently will still proceed, but it's good practice.

The trusty dependencies are now hosted on Bintray.

When the MSVC_CRTDBG option is set by the developer, we will link in the
dbghelper library to enable memory lead detection in MSVC projects. We
are doing so by adding it to the variable `CMAKE_C_STANDARD_LIBRARIES`,
so that it is linked for every library and executable built by CMake.
But this causes our builds to fail with a linker error:

```
    LINK: fatal error LNK1104: cannot open file 'advapi32.lib;Dbghelp.lib'
```

The issue here is that we are treating the variable as if it were an
array of libraries by setting it via the following command:

```
    SET(CMAKE_C_STANDARD_LIBRARIES "${CMAKE_C_STANDARD_LIBRARIES}"
        "Dbghelp.lib")
```

The generated build commands will then simply stringify the variable,
concatenating all the contained libraries with a ";". This causes the
observed linking failure.

To fix the issue, we should just treat the variabable as a simple
string. So instead of adding multiple members, we just add the
"Dbghelp.lib" library to the existing string, separated by a space
character.

The current version of zlib bundled with libgit2 is version 1.2.8. This
version has several CVEs assigned:

- CVE-2016-9843
- CVE-2016-9841
- CVE-2016-9842
- CVE-2016-9840

Upgrade the bundled version to the current release 1.2.11, which has
these vulnerabilities fixes.

adding GIT_FILTER_VERSION to GIT_FILTER_INIT as part of convention

travis: replace use of deprecated homebrew/dupes tap

Test improvements