The indexer was creating a packfile object separately from the
code in pack.c which was a problem since I put a call to
git_mutex_init into just pack.c.  This commit updates the pack
function for creating a new pack object (i.e. git_packfile_check())
so that it can be used in both places and then makes indexer.c
use the shared initialization routine.

There are also a few minor formatting and warning message fixes.