config_write -- handle duplicate section headers when deleting entries

Closes #2966.

Fix git_checkout_tree() to do index filemodes correctly on Windows.

Fix for Issue #3023 tests fail with no network

Moved offending tests from network to online so they will get skipped
when there is a lack of network connectivity:
-test_online_remotes__single_branch
-test_online_remotes__restricted_refspecs

Attempt to fix Windows TLS memory leak.

If git_config_delete is to work properly in the presence of duplicate section
headers, it cannot stop searching at the end of the first matching section, as
there may be another matching section later.
When config_write is used for deletion (value = NULL), it may only terminate
when the desired key is found or there are no sections left to parse.

Instead of using a config file in resources, include the config file content to
be tested directly in the test.

Add a unittest to validate bug #3043, where a duplicate empty config header
could cause deletion of a config entry to fail silently. The bug is currently
unresolved and this test will fail.

Rebase fixes

Handle invalid multiline configuration

The idea...sometimes, a filemode is user-specified via an
explicit git_index_entry.  In this case, believe the user, always.

Sometimes, it is instead built up by statting the file system.  In
those cases, go with the existing logic we have to determine
whether the file system supports all filemodes and symlinks, and
make the best guess.

On file systems which have full filemode and symlink support, this
commit should make no difference.  On others (most notably Windows),
this will fix problems things like:
* git_index_add and git_index_add_frombuffer() should be believed.
* As a consequence, git_checkout_tree should make the filemodes in
the index match the ones in the tree.
* And diffs with GIT_DIFF_UPDATE_INDEX don't write the wrong filemodes.
* And merges, and probably other downstream stuff now fixed, too.

This makes my previous changes to checkout.c unnecessary,
so they are now reverted.

Also, added a test for index_entry permissions from git_index_add
and git_index_add_frombuffer, both of which failed before these changes.

`git_rebase_init` and `git_rebase_open` should take a
`git_rebase_options` and use it for future rebase operations on
that `rebase` object.

git_rebase_commit should return `GIT_EUNMERGED` when unmerged items
exist in the index, per the documentation.  Test that this is correct.

In `git_rebase_operation_current()`, indicate when a rebase has not
started (with `GIT_REBASE_NO_OPERATION`) rather than conflating that
with the first operation being in-progress.

Don't assume that comment chars are comment chars, they may be (an
attempt to be escaped).  If so, \; is not a valid escape sequence,
complain.

Combine unquoting and multiline detection to avoid ambiguity when
parsing.

Make sure to also update delta->nfiles when merging diffs

ignore: fix negative ignores without wildcards.

Implement git_submodule_set_branch.

Diff fixes

Fix memleak in test/core/mkdir reported by CRTDBG