Breaking RefDB changes

Don't bail on parsing commits with an invalid timezone

git doesn't do that, and it's not something that's usually
actionable to fix. if you have a git repository with one bad
timezone in the history, it's too late to change it most likely.

Make git_index_read_tree preserve stat cache where possible

Instead of just blowing away the stat cache data when loading a
new tree into the index, this checks if each loaded item has a
corresponding existing item with the same OID and if so, copies
the stat data from the old item to the new one so it will not be
blown away.

Make iterators use GIT_ITEROVER & smart advance

1. internal iterators now return GIT_ITEROVER when you go past the
   last item in the iteration.
2. git_iterator_advance will "advance" to the first item in the
   iteration if it is called immediately after creating the
   iterator, which allows a simpler idiom for basic iteration.
3. if git_iterator_advance encounters an error reading data (e.g.
   a missing tree or an unreadable file), it returns the error
   but also attempts to advance past the invalid data to prevent
   an infinite loop.

Updated all tests and internal usage of iterators to account for
these new behaviors.

improve test for index extension truncation

Added support for setting transport flags (No check SSL cert) to git_clo...

Introduce git_reference_shorthand

remote: make default tag retrieving behaviour consistent

Build with the system's http-parser installation if available

Default for newly created remotes will be auto.
Default when loading existing remotes with no tag retrieving behaviour set, was already auto.

thread: fix segfault on Windows 64 bits

`lpExitCode` is a pointer to a long. A long is 32 bits wide on Windows.

It means that on Windows 64bits, `GetExitCodeThread()` doesn't set/clear the high-order bytes of the 64 bits memory space pointed at by `value_ptr`.

allow (ignore) bare slash in gitignore

Fix memory leak in oid shortener tests

Fix two typos in the merge docs.

packbuilder: also write index in git_packbuilder_write

git_packbuilder_write() used to write a packfile to the passed file
path. Instead, ask for a destination directory and create both the
packfile and an index, as most users probably do expect.

tests: don't verify SSH unsupported with GIT_SSH

Fix documentation of git_branch_delete.

The reference should be freed by the user, not the library.

qsort_r appeared in glibc 2.8