fsync all the things

Coverity fixes

Fix the documentation for git_cred_acquire_cb

git_cred_acquire_cb isn't using the standard @param and @return tags.
This is causing the generated documentation to not be formatted
properly.

While parsing patch header lines, we iterate over each line and check if
the line has trailing garbage. What we do not check though is that the
line is actually a line ending with a trailing newline.

Fix this by checking the return code of `parse_advance_expected_str`.

The `pack_entry_find_prefix` function receives a `git_rawobj` structure
as argument. While the function first initializes the structure to a
sensible state, Coverity is unable to correctly detect this, resulting
in a warning.

Fix this warning by initializing the object to all-zeroes before passing
it to the function.

While parsing section headers, we use a buffer to store the actual
section name. We do not check though if the buffer runs out of memory at
any stage. Do so.

The function `pass_whole_blame` performs an object lookup but does not
check if the lookup actually succeeds. Convert the function to return an
error code and check for it in the calling function.

README: Mention how to run tests

Fix typo in remote.h API

The OpenSSL library may require multiple locks to work correctly, where
it is the caller's responsibility to initialize and release the locks.
While we correctly initialized up to `n` locks, as determined by
`CRYPTO_num_locks`, we were repeatedly freeing the same mutex in our
shutdown procedure.

Fix the issue by freeing locks at the correct index.

Remove `map_free` macros

The symlink destination is always concatenated to the original path. Fix
this by using `git_buf_sets` instead of `git_buf_puts`.

Diff fixes

merge_driver: fix const-correctness for source getters

The `map_free` functions were not implemented as functions but instead
as macros which also set the map to NULL. While this is most certainly
sensible in most cases, we should prefer the more obvious behavior,
namingly leaving the map pointer intact.

Furthermore, this macro has been refactored incorrectly during the
map-refactorings: the two statements are not actually grouped together
by a `do { ... } while (0)` block, as it is required for macros to
match the behavior of functions more closely. This has led to at least
one subtle nesting error in `pack-objects.c`. The following code block

```
    if (pb->object_ix)
        git_oidmap_free(pb->object_ix);
```

would be expanded to

```
    if (pb->object_ix)
        git_oidmap__free(pb->object_ix); pb->object_ix = NULL;
```

which is not what one woudl expect. While it is not a bug here as it
would simply become a no-op, the wrong implementation could lead to bugs
in other occasions.

Fix this by simply removing the macro altogether and replacing it with
real function calls. This leaves the burden of setting the pointer to
NULL afterwards to the caller, but this is actually expected and behaves
like other `free` functions.

We currently call `git_strmap_free` on `checkout_data.mkdir_map` in the
`checkout_data_clear` function. The only thing protecting us from a
double-free is that the `git_strmap_free` function is in fact not a
function, but a macro that also sets the map to NULL.

Remove the second call to `git_strmap_free` and explicitly set the map
member to NULL.

submodule: catch when submodule is not staged on update

winhttp: disambiguate error messages when sending requests

When calling `git_submodule_update` on a submodule, we have to retrieve
the ID of the submodule entry in the index. If the function is called on
a submodule which is only partly initialized, the submodule entry may
not be added to the index yet. This leads to an assert when trying to
look up the blob later on.

Fix the issue by checking if the index actually holds the submodule's
ID and erroring out if it does not.

The function `diff_parsed_alloc` allocates and initializes a
`git_diff_parsed` structure. This structure also contains diff options.
While we initialize its flags, we fail to do a real initialization of
its values. This bites us when we want to actually use the generated
diff as we do not se the option's version field, which is required to
operate correctly.

Fix the issue by executing `git_diff_init_options` on the embedded
struct.

In a diff, the shortest possible hunk with a modification (that is, no
deletion) results from a file with only one line with a single character
which is removed. Thus the following hunk

    @@ -1 +1 @@
    -a
    +

is the shortest valid hunk modifying a line. The function parsing the
hunk body though assumes that there must always be at least 4 bytes
present to make up a valid hunk, which is obviously wrong in this case.
The absolute minimum number of bytes required for a modification is
actually 2 bytes, that is the "+" and the following newline. Note: if
there is no trailing newline, the assumption will not be offended as the
diff will have a line "\ No trailing newline" at its end.

This patch fixes the issue by lowering the amount of bytes required.

Now that the `git_diff_foreach` function does not depend on internals of
the `git_patch_generated` structure anymore, we can easily move it to
the actual diff code.

The current logic of `git_diff_foreach` makes the assumption that all
diffs passed in are actually derived from generated diffs. With these
assumptions we try to derive the actual diff by inspecting either the
working directory files or blobs of a repository. This obviously cannot
work for diffs parsed from a file, where we do not necessarily have a
repository at hand.

Since the introduced split of parsed and generated patches, there are
multiple functions which help us to handle patches generically, being
indifferent from where they stem from. Use these functions and remove
the old logic specific to generated patches. This allows re-using the
same code for invoking the callbacks on the deltas.

Under the existing logic, we try to load patch contents differently,
depending on whether the patch files stem from the working directory or
not. But actually, the executed code paths are completely equal to each
other -- so we were always the code despite the condition.

Remove the condition altogether and conflate both code paths.

Skip uninteresting commits in revwalk timesort iterator

git_futils_readbuffer: don't compute sha-1

rebase: ignore untracked files in submodules

Fixes #4099

Don't compute the sha-1 in `git_futils_readbuffer_updated` unless the
checksum was requested.  This means that `git_futils_readbuffer` will
not calculate the checksum unnecessarily.

Support namespaced references again

These simple tests only ensure that we enforce the existence of a
namespace; these mirror the rugged tests, they are not exhaustive.