The header src/cc-compat.h defines portable format specifiers PRIuZ, PRIdZ, and PRIxZ. The original report highlighted the need to use these specifiers in examples/network/fetch.c.  For this commit, I checked all C source and header files not in deps/ and transitioned to the appropriate format specifier where appropriate.

When the stream list init or write fail, we must also make sure to close
the stream, as that's the function contract.

Similarly to how git itself does it, allow the index update operation to
stage a change in a submodule's HEAD.

This also affects `git_index_add_bypath()` by providing a better error
message and a specific error code when a directory is passed.

This is to be returned when the operation which the user asked for is
not possible to do on a directory.

If we get the path from the gitmodules file, look up the submodule we're
interested in by path, rather then by name. Otherwise we might get
duplicate results.

When we rename a submodule, we should be merging two sets of information
based on whether their path is the same. We currently only deduplicate
on equal name, which causes us to double-report.

Upgrade xdiff to version used in core git 2.4.5 (0df0541).

Corrects an issue where an LF is added at EOF while applying
an unrelated change (ba31180), cleans up some unused code (be89977 and
e5b0662), and provides an improved callback to avoid leaking internal
(to xdiff) structures (467d348).

This also adds some additional functionality that we do not yet take
advantage of, namely the ability to ignore changes whose lines are
all blank (36617af).

When invoked with three files that each lack a trailing newline,
the merge result should also lack a trailing newline.

Versions prior to 0.9.8f  did not have this function, rhel/centos5 are still on a
heavily backported version of 0.9.8e and theoretically supported until March 2017

Without this ifdef, I get the following link failure:
```
CMakeFiles/libgit2_clar.dir/src/openssl_stream.c.o: In function `openssl_connect':
openssl_stream.c:(.text+0x45a): undefined reference to `SSL_set_tlsext_host_name'
collect2: error: ld returned 1 exit status
make[6]: *** [libgit2_clar] Error 1
```

filter: add docs for streaming filters

These functions are available on the public API but don't have any
documentation, so they don't appear on the API reference. Fix that.

iterator_walk: cast away constness for free

filter::stream: free the filter sanely

Don't use the filter's free callback to free the actual data structure
holding the filter, as we may not always actually initialize it (the
test may be skipped).

Correctly delimit the keys for submodule lookup

The regex we use to look at the gitmodules file does not correctly
delimit the name of submodule which we want to look up and puts '.*'
straight after the name, maching on any submodule which has the seeked
submodule as a prefix of its name.

Add the missing '\.' in the regex so we want a full stop to exist both
before and after the submodule name.

When two submodules are fairly similar, we may end up loading the wrong
one.

Fix 8.3 filename tests failure when 8.3 is disabled

The function was removed, but its declaration and changelog entry about
its removal were forgotten.

The comment in the test doesn't make any sense as the function doesn't
exist anymore, so get rid of it as well.

Fix #3093 - remove declaration of unused function git_fetch__download…

Function was added in commit 2c982daa on October 5, 2011,
and removed in commit 41fb1ca0 on October 29, 2012.
Given the length of time it's gone unused, it's safe to remove now.

More warnings

http: fixed leak when asking for credentials again

t->cred might have been allocated the previous time and needs to be
freed before asking caller for credentials again.

memory leak refspec.c

Remove some warnings