nsec: update staging test for GIT_USE_NSECS
The index::nsec::staging_maintains_other_nanos test was created to ensure that when we stage an entry when GIT_USE_NSECS is *unset* that we truncate the index entry and do not persist the (old, invalid) nanosec values. Ensure that when GIT_USE_NSECS is *set* that we do not do that, and actually write the correct nanosecond values.
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