repository: rename `path_repository` and `path_gitlink`
The `path_repository` variable is actually confusing to think about, as it is not always clear what the repository actually is. It may either be the path to the folder containing worktree and .git directory, the path to .git itself, a worktree or something entirely different. Actually, the intent of the variable is to hold the path to the gitdir, which is either the .git directory or the bare repository. Rename the variable to `gitdir` to avoid confusion. While at it, also rename `path_gitlink` to `gitlink` to improve consistency.
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