Submodule status improvements
This fixes the way that submodule status is checked to bypass just about all of the caching in the submodule object. Based on the ignore value, it will try to do the minimum work necessary to find the current status of the submodule - but it will actually go to disk to get all of the current values. This also removes the custom refcounting stuff in favor of the common git_refcount style. Right now, it is still for internal purposes only, but it should make it easier to add true submodule refcounting in the future with a public git_submodule_free call that will allow bindings not to worry about the submodule object getting freed from underneath them.
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