The current signature of `git_worktree_prune` accepts a flags field to
alter its behavior. This is not as flexible as we'd like it to be when
we want to enable passing additional options in the future. As the
function has not been part of any release yet, we are still free to
alter its current signature. This commit does so by using our usual
pattern of an options structure, which is easily extendable without
breaking the API.