This changes the iterator API so that flags can be passed in to
the constructor functions to control the ignore_case behavior.
At this point, the flags are not supported on tree iterators (i.e.
there is no functional change over the old API), but the API
changes are all made to accomodate this.

By the way, I went with a flags parameter because in the future
I have a couple of other ideas for iterator flags that will make
it easier to fix some diff/status/checkout bugs.